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Twigstats: New tool reveals hi-res genetic view of people’s ancestors
- The Hindu |
- Science and Technology |
- 2025-01-07
- ancient DNA
- Twigstats
The article explores advancements in tracing genetic ancestry using ancient DNA (aDNA) and introduces Twigstats, a new genealogical method. It highlights insights into population dynamics and historical migrations, emphasizing the complex interplay of genetics, culture, and history.
Genetic Ancestry and Ancient DNA Studies
Tracing genetic ancestry across populations poses significant challenges due to statistical similarities across geographical regions. Prehistoric and medieval human remains provide valuable ancient DNA (aDNA) that helps uncover past population dynamics, admixture events, and migrations. However, the task remains complex due to the similarity among populations and the limited availability of high-quality aDNA samples compared to modern genomic data.
Challenges in Genetic Ancestry Analysis
- Populations across regions are statistically similar, complicating genetic ancestry tracing.
- Differences in sample sizes between ancient, medieval, and modern genomes affect sequencing quality.
- Incorporation of gene flows from ancient to modern genomes adds complexity to genetic models.
Traditional and Advanced Methods in Ancestry Studies
Traditionally, researchers have used Single Nucleotide Polymorphisms (SNPs) for reconstructing genetic histories. However, SNP-based analysis requires high-quality DNA samples and struggles with closely related ancestors.
- SNPs are natural genetic variations used to study genetic ancestry.
- Haplotypes and rare variants offer more powerful alternatives to SNPs.
- Genealogical tree inference methods capture haplotype-sharing and rare variants effectively.
Innovative Approach: Twigstats
A collaboration led by the Francis Crick Institute developed Twigstats, a method that enhances the statistical power of ancestry analysis and reduces errors. It accounts for recent population coalescence and provides high-resolution genetic histories.
- Tested on simulated genetic conditions and historical data for robustness.
- Reconstructed genetic history of 1,556 aDNA samples from northern and central Europe (500 BC to 1000 AD).
- Highlighted individual-level ancestry at high resolutions.
Findings and Implications
The analysis using Twigstats provided fresh insights into population movements, admixture events, and genetic legacies, particularly focusing on the Viking Age.
- Evidence of Scandinavian ancestry was found in Britain and the Baltic regions before the Viking Age.
- Gene flows into Scandinavia from continental Europe and the British Isles were recorded before the Viking Age.
- Viking activity had a widespread impact, demonstrated by genetic traces in Britain, Ireland, and Iceland.
The study illustrates how genomic analysis, coupled with archaeological and historical evidence, can provide a nuanced understanding of population dynamics and cultural histories. The methods developed can be applied globally for high-resolution genetic history reconstructions.
The researchers are affiliated with Karkinos Healthcare, IIT Kanpur, and Dr. DY Patil Medical College. All opinions expressed in the study are personal.
The end of global climate policy
- The Hindu |
- Environment |
- 2025-01-07
- Climate Conference
- carbon emission
- climate policy
The COP29 U.N. Climate Summit in Baku, 2024, marked a pivotal shift in climate policy, challenging the donor-recipient dynamic and urging developing nations to lead their own sustainable futures.
Climate Conference in Baku 2024: A Paradigm Shift
The climate conference in Baku, 2024, signified a major transformation by challenging the traditional dichotomy of 'donors' and 'recipients' and advocating for a new global sustainability forum.
Historical Context and Global Dynamics
- The original climate treaty of 1992 aimed for collective action to address climate concerns.
- The G7 focused on reducing future carbon emissions, although cumulative emissions were acknowledged as critical.
- Developing nations accepted obligations they did not originate, expecting technology transfer and funds.
- The G7's strategy has led to their continued advantage by focusing on symptoms rather than root causes.
Current Issues and Global Inequities
- The G7 has largely detached from climate responsibilities, creating an "optical illusion" of financial support by 2035.
- The Global South, representing a significant population and GDP share, is increasingly questioning G7-led climate policies.
- Nationally Determined Contributions from 72 countries now include the concept of a "just transition".
- Climate justice questions inequalities in emission levels and solutions like carbon pricing.
Urbanization and Resource Use
- Urbanization accounts for significant global emissions and resource use.
- The G7, with a small population share, historically consumed a large proportion of global resources.
- By 2050, Asia is expected to match its population share with emissions, contrasting with the G7's continued high emissions per capita.
Proposed Initiatives for Global Sustainability
- BRICS and partners should form an alternative sustainability forum focusing on urban energy transitions.
- UN Climate negotiations should center on G7 emissions and grants to vulnerable countries.
- Redefine international fora as platforms for assessing global positions and planning necessary adjustments.
Faecal coliform in Adyar river exceeds safe limits by 10 times: TNPCB
- The Hindu |
- Environment |
- 2025-01-07
- Adyar River
- Faecal Coliform
The Tamil Nadu Pollution Control Board's report reveals faecal coliform levels in the Adyar River exceed safe limits by over ten times, causing fish kills and severe water quality issues.
Adyar River Pollution Report
Faecal Coliform Levels
- Excessive Contamination: Faecal coliform levels in the Adyar River were found to be more than 10 times the prescribed safe limit according to a report by the Tamil Nadu Pollution Control Board (TNPCB).
- Measurements: Water samples collected showed levels of 1026 MPN/100 ml, significantly above the permissible limit of 100 MPN/100 ml. MPN (Most Probable Number) is a method to estimate microorganism concentration.
Additional Water Quality Indicators
- Low Oxygen Levels: Inspections showed dissolved oxygen levels under 2 parts per million, below the threshold needed to sustain aquatic life.
- Organic Contamination: Biological Oxygen Demand was 133 mg/l and Chemical Oxygen Demand was 136 mg/l, indicating severe pollution.
- Nutrient Overload: Total Nitrogen was noted at 57.74 mg/l, exceeding the standard of 23.697 mg/l.
Causes and Effects
- Cause of Fish Kills: High contamination levels were linked to fish deaths observed in the Adyar eco-park in June 2024.
- Source of Pollution: Unchecked discharge of untreated domestic sewage from residential areas was identified as the primary source of contamination. No industrial discharge was noted as a contributing factor.
Recommendations and Response
- Immediate Actions: TNPCB recommended that the Greater Chennai Corporation explore the installation of a sewage treatment plant to prevent further contamination.
Enhancing governance the digital way
- The Hindu |
- Polity and Governance |
- 2025-01-07
- Digital Governance
- iGOT
The article discusses India's strides in digital governance aimed at improving public service delivery and enhancing government employees' skills.
Digital Governance in India: Enhancing Public Service Efficiency
India's journey towards digital governance aims to improve citizen services and bolster government employees' capabilities, emphasizing that public service delivery efficiency is tied to the workforce's skills. Despite progress, further efforts are needed to harness the potential of this digital shift fully.
Complexity of Governance
Governance involves intricate decision-making processes among various stakeholders, including government bodies, NGOs, and community leaders. Influenced by Chanakya's principles, modern governance theories emphasize statecraft, economic policy, and ethical leadership.
Integration of Digital Tools
Digital governance signifies a significant shift in how government employees and intermediaries engage with their work, enhancing communication, decision-making, and workflow efficiency. As expectations evolve, employees must adapt to digital platforms.
Key Initiatives and Platforms
- iGOT Karmayogi Platform (2020)
- Aims to equip government officials with skills in data analytics, public administration, and digital technologies.
- Offers personalized learning paths for continuous improvement.
- e-Office Initiative
- Digitizes government workflows, reducing paperwork reliance and enhancing efficiency.
- Promotes real-time communication and transparency.
- Government e-Marketplace (GeM)
- Facilitates online procurement, playing a crucial role in digital transformation.
Challenges in Digital Governance
- Resistance to Change: Some workforce segments are slow to adapt, requiring extra training and support.
- Lack of Incentives: Concerns about initiatives becoming mere attendance trackers without delivering real value.
- Digital Divide: Limited access to high-speed Internet and digital tools in rural areas may leave employees and citizens behind.
- Cybersecurity Concerns: Protecting sensitive information is crucial as operations shift online.
- Need for Continuous Learning: Ongoing training and upskilling are essential due to the rapid evolution of digital tools.
Conclusion
India has laid a strong digital governance foundation, but further steps are necessary to fully harness its potential. Robust infrastructure, targeted training, and a dynamic workforce are essential to setting a global benchmark. Ensuring inclusivity in skill development is critical for achieving an accountable, transparent governance model.
Authors: Pallawi Anand, a 2015 IRS civil servant with a Master’s in Public Policy from McGill University, and Venkatesh Raghavendra, a global social entrepreneur advising state governments and civil society organizations.
Indonesia is admitted to the BRICS bloc of developing nations, Brazil announces
- The Hindu |
- International Relations |
- 2025-01-07
- BRICS
Indonesia has become a full member of BRICS, a bloc of developing economies, as announced by Brazil, the group's presiding country.
Indonesia Joins BRICS
Brazil announced on January 6, 2025, that Indonesia has become a full member of the BRICS bloc, which is recognized as a counterweight to Western economies.
Background and Context
- The announcement was made during the G20 Leaders' Meeting in Rio de Janeiro, Brazil.
- Brazil holds the rotating presidency of BRICS in 2025.
- Indonesia's membership was approved during the 2023 Johannesburg summit.
Significance of Indonesia's Membership
- Indonesia is the world's fourth-most populous nation.
- It has the largest population and economy in Southeast Asia.
- Indonesia's membership aligns with BRICS' goals of reforming global governance institutions.
- It contributes positively to enhancing South-South cooperation.
BRICS Formation and Expansion
- BRICS was initially formed by Brazil, Russia, India, and China in 2009.
- South Africa joined the bloc in 2010.
- Recent expansions include Iran, Egypt, Ethiopia, and the United Arab Emirates.
- Saudi Arabia has been invited to join, but has not yet committed.
- Other countries like Turkey, Azerbaijan, and Malaysia have applied for membership.
High Court seeks government reply on tourist vehicles blocking tigress' path in Maharashtra sanctuary
- The Hindu |
- Environment |
- 2025-01-07
- Umred Pauni Karhandla wildlife Sanctuary
- Bor Tiger Reserve
The Bombay High Court addressed an incident at Umred-Pauni-Karhandla Sanctuary, where safari vehicles obstructed a tigress and her cubs, leading to penalties for drivers and guides. Measures are being implemented to prevent future disturbances.
Incident in Umred-Pauni-Karhandla Sanctuary
An incident occurred in Maharashtra's Umred-Pauni-Karhandla Sanctuary where safari vehicles obstructed a tigress and her cubs, drawing attention from the Bombay High Court.
Court's Action
- The Bombay High Court, Nagpur bench, led by Justices Nitin Sambre and Vrushali Joshi, took suo motu cognisance of the incident.
- The court issued a notice to the state's principal chief conservator of forests, seeking a detailed affidavit on actions taken and preventive measures.
- A plea on the issue will be heard on January 8, 2025.
Details of the Incident
- Viral videos showed safari vehicles crowding around tigress F-2 and her five cubs, blocking their path in the sanctuary's buffer zone.
- The incident occurred on December 31, 2024, in the Gothangaon area of the Kuhi wildlife range.
Actions Taken
- Four drivers and guides involved were suspended for three months by the state forest department.
- Fines imposed: ₹25,000 on gypsy SUV drivers and ₹1,000 on nature guides.
- Cases registered under the Wildlife Protection Act, 1972.
- Tourists involved have been banned from future visits to the sanctuary.
Future Preventive Measures
- A committee, headed by the deputy director of Bor Tiger Reserve, is established to recommend preventive measures.
- Field officers and staff are instructed to increase regular patrolling along safari routes.
- Special meetings and workshops for nature guides and drivers are organized to raise awareness and promote ecotourism sensitivity.